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pepitope 0.3.1
- Multi-exon variants are now dropped with a warning (#5)
- FASTQ demultiplexing is now done in a clean directory (#7)
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fqtk and guide-counter are now supplied via R packages
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fqtk and guide-counter now handle spaces in paths correctly (#8)
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filter_variants will now error if provided more than one sample implicitly
pepitope 0.3.0
- Added QC and screen incl. plotting functionality to the package
- Added command-line wrappers for
fqtk demultiplexing and guide-counter
- Provided usage vignettes for Variant calling, QC and Co-culture screen
pepitope 0.2.0
- Added support for RNA-based gene fusion using the
rnafusion NF-core pipeline
pepitope 0.1.0
- Provided simple variant annotation from the
sarek NF-core pipeline