Create example peptide sheets for multiple samples
Examples
valid_barcodes = example_barcodes(1000)
example_peptides(valid_barcodes)
#> $pat1
#> var_id mut_id pep_id pep_type gene_name
#> 1 chr1:114713908_T/A NRAS_Q61 NRAS_Q61 ref NRAS
#> 2 chr1:114713908_T/A NRAS_Q61 NRAS_Q61L alt NRAS
#> 3 chr1:114713908_T/C NRAS_Q61 NRAS_Q61R alt NRAS
#> 4 chr2:208248388_G/A IDH1_R132 IDH1_R132 ref IDH1
#> 5 chr2:208248388_G/A IDH1_R132 IDH1_R132L alt IDH1
#> 6 chr3:179234297_A/G PIK3CA_H1047 PIK3CA_H1047 ref PIK3CA
#> 7 chr3:179234297_A/G PIK3CA_H1047 PIK3CA_H1047R alt PIK3CA
#> 8 chr4:54285926_A/T PDGFRA_D842 PDGFRA_D842 ref PDGFRA
#> 9 chr4:54285926_A/T PDGFRA_D842 PDGFRA_D842V alt PDGFRA
#> 10 chr4:54733155_A/T KIT_D816 KIT_D816 ref KIT
#> 11 chr4:54733155_A/T KIT_D816 KIT_D816V alt KIT
#> 12 chr4:152326137_C/T FBXW7_R505 FBXW7_R505 ref FBXW7
#> 13 chr4:152326137_C/T FBXW7_R505 FBXW7_R505S alt FBXW7
#> 14 chr7:55181370_C/CA EGFR_787 EGFR_787 ref EGFR
#> 15 chr7:55181370_C/CA EGFR_787 EGFR_787fs-1 alt EGFR
#> 16 chr7:55181370_C/CA EGFR_787 EGFR_787fs-2 alt EGFR
#> 17 chr7:55181370_C/CA EGFR_787 EGFR_787fs-3 alt EGFR
#> 18 chr7:55181370_C/CA EGFR_787 EGFR_787fs-4 alt EGFR
#> 19 chr7:55181370_C/CA EGFR_787 EGFR_787fs-5 alt EGFR
#> 20 chr7:55181370_C/CA EGFR_787 EGFR_787fs-6 alt EGFR
#> 21 chr7:55181370_C/CA EGFR_787 EGFR_787fs-7 alt EGFR
#> 22 chr7:55181374_ATC/A EGFR_789 EGFR_789 ref EGFR
#> 23 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-1 alt EGFR
#> 24 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-2 alt EGFR
#> 25 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-3 alt EGFR
#> 26 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-4 alt EGFR
#> 27 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-5 alt EGFR
#> 28 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-6 alt EGFR
#> 29 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-7 alt EGFR
#> 30 chr7:55181378_C/T EGFR_T790 EGFR_T790 ref EGFR
#> 31 chr7:55181378_C/T EGFR_T790 EGFR_T790M alt EGFR
#> 32 chr7:55181394_G/A EGFR_F795 EGFR_F795 ref EGFR
#> 33 chr7:55181394_G/A EGFR_F795 EGFR_F795L alt EGFR
#> 34 chr7:55191822_T/G EGFR_L858 EGFR_L858 ref EGFR
#> 35 chr7:55191822_T/G EGFR_L858 EGFR_L858R alt EGFR
#> 36 chr7:116771936_C/T MET_T1010 MET_T1010 ref MET
#> 37 chr7:116771936_C/T MET_T1010 MET_T1010I alt MET
#> 38 chr9:5073770_G/T JAK2_V617 JAK2_V617 ref JAK2
#> gene_id tx_id
#> 1 ENSG00000213281 ENST00000369535
#> 2 ENSG00000213281 ENST00000369535
#> 3 ENSG00000213281 ENST00000369535
#> 4 ENSG00000138413 ENST00000345146
#> 5 ENSG00000138413 ENST00000345146
#> 6 ENSG00000121879 ENST00000263967
#> 7 ENSG00000121879 ENST00000263967
#> 8 ENSG00000134853 ENST00000257290
#> 9 ENSG00000134853 ENST00000257290
#> 10 ENSG00000157404 ENST00000288135
#> 11 ENSG00000157404 ENST00000288135
#> 12 ENSG00000109670 ENST00000281708
#> 13 ENSG00000109670 ENST00000281708
#> 14 ENSG00000146648 ENST00000275493
#> 15 ENSG00000146648 ENST00000275493
#> 16 ENSG00000146648 ENST00000275493
#> 17 ENSG00000146648 ENST00000275493
#> 18 ENSG00000146648 ENST00000275493
#> 19 ENSG00000146648 ENST00000275493
#> 20 ENSG00000146648 ENST00000275493
#> 21 ENSG00000146648 ENST00000275493
#> 22 ENSG00000146648 ENST00000275493
#> 23 ENSG00000146648 ENST00000275493
#> 24 ENSG00000146648 ENST00000275493
#> 25 ENSG00000146648 ENST00000275493
#> 26 ENSG00000146648 ENST00000275493
#> 27 ENSG00000146648 ENST00000275493
#> 28 ENSG00000146648 ENST00000275493
#> 29 ENSG00000146648 ENST00000275493
#> 30 ENSG00000146648 ENST00000275493
#> 31 ENSG00000146648 ENST00000275493
#> 32 ENSG00000146648 ENST00000275493
#> 33 ENSG00000146648 ENST00000275493
#> 34 ENSG00000146648 ENST00000275493
#> 35 ENSG00000146648 ENST00000275493
#> 36 ENSG00000105976 ENST00000318493
#> 37 ENSG00000105976 ENST00000318493
#> 38 ENSG00000096968 ENST00000381652
#> tiled
#> 1 ATAGATGGTGAAACCTGTTTGTTGGACATACTGGATACAGCTGGACAAGAAGAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCGAA
#> 2 ATAGATGGTGAAACCTGTTTGTTGGACATACTGGATACAGCTGGACTAGAAGAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCGAA
#> 3 ATAGATGGTGAAACCTGTTTGTTGGACATACTGGATACAGCTGGACGAGAAGAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCGAA
#> 4 ATCCCCCGGCTTGTGAGTGGATGGGTAAAACCTATCATCATAGGTCGTCATGCTTATGGGGATCAATACAGAGCAACTGATTTTGTTGTTCCT
#> 5 ATCCCCCGGCTTGTGAGTGGATGGGTAAAACCTATCATCATAGGTCTTCATGCTTATGGGGATCAATACAGAGCAACTGATTTTGTTGTTCCT
#> 6 GAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATGGTGGCTGGACAACAAAAATGGATTGGATCTTCCACACAATT
#> 7 GAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACGTCATGGTGGCTGGACAACAAAAATGGATTGGATCTTCCACACAATT
#> 8 GCACAAGGAAAAATTGTGAAGATCTGTGACTTTGGCCTGGCCAGAGACATCATGCATGATTCGAACTATGTGTCGAAAGGCAGTACCTTTCTG
#> 9 GCACAAGGAAAAATTGTGAAGATCTGTGACTTTGGCCTGGCCAGAGTCATCATGCATGATTCGAACTATGTGTCGAAAGGCAGTACCTTTCTG
#> 10 ACTCATGGTCGGATCACAAAGATTTGTGATTTTGGTCTAGCCAGAGACATCAAGAATGATTCTAATTATGTGGTTAAAGGAAACGCTCGACTA
#> 11 ACTCATGGTCGGATCACAAAGATTTGTGATTTTGGTCTAGCCAGAGTCATCAAGAATGATTCTAATTATGTGGTTAAAGGAAACGCTCGACTA
#> 12 ACAGGCCAGTGTTTACATGTTTTGATGGGTCATGTTGCAGCAGTCCGCTGTGTTCAATATGATGGCAGGAGGGTTGTTAGTGGAGCATATGAT
#> 13 ACAGGCCAGTGTTTACATGTTTTGATGGGTCATGTTGCAGCAGTCAGCTGTGTTCAATATGATGGCAGGAGGGTTGTTAGTGGAGCATATGAT
#> 14 CCCCACGTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTC
#> 15 CCCCACGTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCACACTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGT
#> 16 ACTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTG
#> 17 CCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTT
#> 18 GTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACC
#> 19 GGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGC
#> 20 GCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTG
#> 21 GGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTGGATGGCATTGGAATCAATTTTACACAGAATCTATACCCACCAGAG
#> 22 GTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAA
#> 23 GTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCAACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACA
#> 24 AACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCA
#> 25 ACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCA
#> 26 GCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCA
#> 27 GCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGA
#> 28 GCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTG
#> 29 GGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTGGATGGCATTGGAATCAATTTTACACAGAATCTATACCCACCAGAG
#> 30 TGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACAC
#> 31 TGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCATGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACAC
#> 32 ATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGC
#> 33 ATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTAGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGC
#> 34 GTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGA
#> 35 GTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCGGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGA
#> 36 ACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTT
#> 37 ACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAATTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTT
#> 38 AGCAAGCTTTCTCACAAGCATTTGGTTTTAAATTATGGAGTATGTGTCTGTGGAGACGAGAATATTCTGGTTCAGGAGTTTGTAAAATTTGGA
#> n_tiles nt peptide barcode_1 barcode_2
#> 1 1 93 IDGETCLLDILDTAGQEEYSAMRDQYMRTGE AAAAAAAAAAAA TAACAAAAAAAA
#> 2 1 93 IDGETCLLDILDTAGLEEYSAMRDQYMRTGE CAAAAAAAAAAA ACACAAAAAAAA
#> 3 1 93 IDGETCLLDILDTAGREEYSAMRDQYMRTGE GAAAAAAAAAAA CCACAAAAAAAA
#> 4 1 93 IPRLVSGWVKPIIIGRHAYGDQYRATDFVVP TAAAAAAAAAAA GCACAAAAAAAA
#> 5 1 93 IPRLVSGWVKPIIIGLHAYGDQYRATDFVVP ACAAAAAAAAAA TCACAAAAAAAA
#> 6 1 93 EQEALEYFMKQMNDAHHGGWTTKMDWIFHTI CCAAAAAAAAAA AGACAAAAAAAA
#> 7 1 93 EQEALEYFMKQMNDARHGGWTTKMDWIFHTI GCAAAAAAAAAA CGACAAAAAAAA
#> 8 1 93 AQGKIVKICDFGLARDIMHDSNYVSKGSTFL TCAAAAAAAAAA GGACAAAAAAAA
#> 9 1 93 AQGKIVKICDFGLARVIMHDSNYVSKGSTFL AGAAAAAAAAAA TGACAAAAAAAA
#> 10 1 93 THGRITKICDFGLARDIKNDSNYVVKGNARL CGAAAAAAAAAA ATACAAAAAAAA
#> 11 1 93 THGRITKICDFGLARVIKNDSNYVVKGNARL GGAAAAAAAAAA CTACAAAAAAAA
#> 12 1 93 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD TGAAAAAAAAAA GTACAAAAAAAA
#> 13 1 93 TGQCLHVLMGHVAAVSCVQYDGRRVVSGAYD ATAAAAAAAAAA TTACAAAAAAAA
#> 14 1 93 PHVCRLLGICLTSTVQLITQLMPFGCLLDYV CTAAAAAAAAAA AACCAAAAAAAA
#> 15 7 93 PHVCRLLGICLTSTVHTHHAAHALRLPPGLC GTAAAAAAAAAA CACCAAAAAAAA
#> 16 7 93 THHAAHALRLPPGLCPGTQRQYWLPVPAQLV TTAAAAAAAAAA GACCAAAAAAAA
#> 17 7 93 PGTQRQYWLPVPAQLVCADRKGHELLGGPSL AACAAAAAAAAA TACCAAAAAAAA
#> 18 7 93 VCADRKGHELLGGPSLGAPRPGSQERTGENT CACAAAAAAAAA ACCCAAAAAAAA
#> 19 7 93 GAPRPGSQERTGENTAACQDHRFWAGQTAGC GACAAAAAAAAA CCCCAAAAAAAA
#> 20 7 93 ACQDHRFWAGQTAGCGRERIPCRRRQSAYQV TACAAAAAAAAA GCCCAAAAAAAA
#> 21 7 93 GRERIPCRRRQSAYQVDGIGINFTQNLYPPE ACCAAAAAAAAA TCCCAAAAAAAA
#> 22 1 93 VCRLLGICLTSTVQLITQLMPFGCLLDYVRE CCCAAAAAAAAA AGCCAAAAAAAA
#> 23 7 93 VCRLLGICLTSTVQLNAAHALRLPPGLCPGT GCCAAAAAAAAA CGCCAAAAAAAA
#> 24 7 93 NAAHALRLPPGLCPGTQRQYWLPVPAQLVCA TCCAAAAAAAAA GGCCAAAAAAAA
#> 25 7 93 TQRQYWLPVPAQLVCADRKGHELLGGPSLGA AGCAAAAAAAAA TGCCAAAAAAAA
#> 26 7 93 ADRKGHELLGGPSLGAPRPGSQERTGENTAA CGCAAAAAAAAA ATCCAAAAAAAA
#> 27 7 93 APRPGSQERTGENTAACQDHRFWAGQTAGCG GGCAAAAAAAAA CTCCAAAAAAAA
#> 28 7 93 ACQDHRFWAGQTAGCGRERIPCRRRQSAYQV TGCAAAAAAAAA GTCCAAAAAAAA
#> 29 7 93 GRERIPCRRRQSAYQVDGIGINFTQNLYPPE ATCAAAAAAAAA TTCCAAAAAAAA
#> 30 1 93 CRLLGICLTSTVQLITQLMPFGCLLDYVREH CTCAAAAAAAAA AAGCAAAAAAAA
#> 31 1 93 CRLLGICLTSTVQLIMQLMPFGCLLDYVREH GTCAAAAAAAAA CAGCAAAAAAAA
#> 32 1 93 ICLTSTVQLITQLMPFGCLLDYVREHKDNIG TTCAAAAAAAAA GAGCAAAAAAAA
#> 33 1 93 ICLTSTVQLITQLMPLGCLLDYVREHKDNIG AAGAAAAAAAAA TAGCAAAAAAAA
#> 34 1 93 VLVKTPQHVKITDFGLAKLLGAEEKEYHAEG CAGAAAAAAAAA ACGCAAAAAAAA
#> 35 1 93 VLVKTPQHVKITDFGRAKLLGAEEKEYHAEG GAGAAAAAAAAA CCGCAAAAAAAA
#> 36 1 93 TPHLDRLVSARSVSPTTEMVSNESVDYRATF TAGAAAAAAAAA GCGCAAAAAAAA
#> 37 1 93 TPHLDRLVSARSVSPITEMVSNESVDYRATF ACGAAAAAAAAA TCGCAAAAAAAA
#> 38 1 93 SKLSHKHLVLNYGVCVCGDENILVQEFVKFG CCGAAAAAAAAA AGGCAAAAAAAA
#> [ reached 'max' / getOption("max.print") -- omitted 29 rows ]
#>
#> $pat2
#> var_id mut_id pep_id pep_type gene_name
#> 1 chr1:114713908_T/A NRAS_Q61 NRAS_Q61 ref NRAS
#> 2 chr1:114713908_T/A NRAS_Q61 NRAS_Q61L alt NRAS
#> 3 chr1:114713908_T/C NRAS_Q61 NRAS_Q61R alt NRAS
#> 4 chr3:179234297_A/G PIK3CA_H1047 PIK3CA_H1047 ref PIK3CA
#> 5 chr3:179234297_A/G PIK3CA_H1047 PIK3CA_H1047R alt PIK3CA
#> 6 chr4:54285926_A/T PDGFRA_D842 PDGFRA_D842 ref PDGFRA
#> 7 chr4:54285926_A/T PDGFRA_D842 PDGFRA_D842V alt PDGFRA
#> 8 chr4:54733155_A/T KIT_D816 KIT_D816 ref KIT
#> 9 chr4:54733155_A/T KIT_D816 KIT_D816V alt KIT
#> 10 chr4:152326137_C/T FBXW7_R505 FBXW7_R505 ref FBXW7
#> 11 chr4:152326137_C/T FBXW7_R505 FBXW7_R505S alt FBXW7
#> 12 chr7:55181370_C/CA EGFR_787 EGFR_787 ref EGFR
#> 13 chr7:55181370_C/CA EGFR_787 EGFR_787fs-1 alt EGFR
#> 14 chr7:55181370_C/CA EGFR_787 EGFR_787fs-2 alt EGFR
#> 15 chr7:55181370_C/CA EGFR_787 EGFR_787fs-3 alt EGFR
#> 16 chr7:55181370_C/CA EGFR_787 EGFR_787fs-4 alt EGFR
#> 17 chr7:55181370_C/CA EGFR_787 EGFR_787fs-5 alt EGFR
#> 18 chr7:55181370_C/CA EGFR_787 EGFR_787fs-6 alt EGFR
#> 19 chr7:55181370_C/CA EGFR_787 EGFR_787fs-7 alt EGFR
#> 20 chr7:55181374_ATC/A EGFR_789 EGFR_789 ref EGFR
#> 21 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-1 alt EGFR
#> 22 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-2 alt EGFR
#> 23 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-3 alt EGFR
#> 24 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-4 alt EGFR
#> 25 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-5 alt EGFR
#> 26 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-6 alt EGFR
#> 27 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-7 alt EGFR
#> 28 chr7:55181378_C/T EGFR_T790 EGFR_T790 ref EGFR
#> 29 chr7:55181378_C/T EGFR_T790 EGFR_T790M alt EGFR
#> 30 chr7:55181394_G/A EGFR_F795 EGFR_F795 ref EGFR
#> 31 chr7:55181394_G/A EGFR_F795 EGFR_F795L alt EGFR
#> 32 chr7:116771936_C/T MET_T1010 MET_T1010 ref MET
#> 33 chr7:116771936_C/T MET_T1010 MET_T1010I alt MET
#> 34 chr11:32396341_C/T WT1_R377 WT1_R377 ref WT1
#> 35 chr11:32396341_C/T WT1_R377 WT1_R377S alt WT1
#> 36 chr12:25245350_C/T KRAS_G12 KRAS_G12 ref KRAS
#> 37 chr12:25245350_C/T KRAS_G12 KRAS_G12D alt KRAS
#> 38 chr12:25245350_C/A KRAS_G12 KRAS_G12V alt KRAS
#> gene_id tx_id
#> 1 ENSG00000213281 ENST00000369535
#> 2 ENSG00000213281 ENST00000369535
#> 3 ENSG00000213281 ENST00000369535
#> 4 ENSG00000121879 ENST00000263967
#> 5 ENSG00000121879 ENST00000263967
#> 6 ENSG00000134853 ENST00000257290
#> 7 ENSG00000134853 ENST00000257290
#> 8 ENSG00000157404 ENST00000288135
#> 9 ENSG00000157404 ENST00000288135
#> 10 ENSG00000109670 ENST00000281708
#> 11 ENSG00000109670 ENST00000281708
#> 12 ENSG00000146648 ENST00000275493
#> 13 ENSG00000146648 ENST00000275493
#> 14 ENSG00000146648 ENST00000275493
#> 15 ENSG00000146648 ENST00000275493
#> 16 ENSG00000146648 ENST00000275493
#> 17 ENSG00000146648 ENST00000275493
#> 18 ENSG00000146648 ENST00000275493
#> 19 ENSG00000146648 ENST00000275493
#> 20 ENSG00000146648 ENST00000275493
#> 21 ENSG00000146648 ENST00000275493
#> 22 ENSG00000146648 ENST00000275493
#> 23 ENSG00000146648 ENST00000275493
#> 24 ENSG00000146648 ENST00000275493
#> 25 ENSG00000146648 ENST00000275493
#> 26 ENSG00000146648 ENST00000275493
#> 27 ENSG00000146648 ENST00000275493
#> 28 ENSG00000146648 ENST00000275493
#> 29 ENSG00000146648 ENST00000275493
#> 30 ENSG00000146648 ENST00000275493
#> 31 ENSG00000146648 ENST00000275493
#> 32 ENSG00000105976 ENST00000318493
#> 33 ENSG00000105976 ENST00000318493
#> 34 ENSG00000184937 ENST00000332351
#> 35 ENSG00000184937 ENST00000332351
#> 36 ENSG00000133703 ENST00000256078
#> 37 ENSG00000133703 ENST00000256078
#> 38 ENSG00000133703 ENST00000256078
#> tiled
#> 1 ATAGATGGTGAAACCTGTTTGTTGGACATACTGGATACAGCTGGACAAGAAGAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCGAA
#> 2 ATAGATGGTGAAACCTGTTTGTTGGACATACTGGATACAGCTGGACTAGAAGAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCGAA
#> 3 ATAGATGGTGAAACCTGTTTGTTGGACATACTGGATACAGCTGGACGAGAAGAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCGAA
#> 4 GAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATGGTGGCTGGACAACAAAAATGGATTGGATCTTCCACACAATT
#> 5 GAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACGTCATGGTGGCTGGACAACAAAAATGGATTGGATCTTCCACACAATT
#> 6 GCACAAGGAAAAATTGTGAAGATCTGTGACTTTGGCCTGGCCAGAGACATCATGCATGATTCGAACTATGTGTCGAAAGGCAGTACCTTTCTG
#> 7 GCACAAGGAAAAATTGTGAAGATCTGTGACTTTGGCCTGGCCAGAGTCATCATGCATGATTCGAACTATGTGTCGAAAGGCAGTACCTTTCTG
#> 8 ACTCATGGTCGGATCACAAAGATTTGTGATTTTGGTCTAGCCAGAGACATCAAGAATGATTCTAATTATGTGGTTAAAGGAAACGCTCGACTA
#> 9 ACTCATGGTCGGATCACAAAGATTTGTGATTTTGGTCTAGCCAGAGTCATCAAGAATGATTCTAATTATGTGGTTAAAGGAAACGCTCGACTA
#> 10 ACAGGCCAGTGTTTACATGTTTTGATGGGTCATGTTGCAGCAGTCCGCTGTGTTCAATATGATGGCAGGAGGGTTGTTAGTGGAGCATATGAT
#> 11 ACAGGCCAGTGTTTACATGTTTTGATGGGTCATGTTGCAGCAGTCAGCTGTGTTCAATATGATGGCAGGAGGGTTGTTAGTGGAGCATATGAT
#> 12 CCCCACGTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTC
#> 13 CCCCACGTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCACACTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGT
#> 14 ACTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTG
#> 15 CCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTT
#> 16 GTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACC
#> 17 GGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGC
#> 18 GCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTG
#> 19 GGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTGGATGGCATTGGAATCAATTTTACACAGAATCTATACCCACCAGAG
#> 20 GTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAA
#> 21 GTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCAACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACA
#> 22 AACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCA
#> 23 ACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCA
#> 24 GCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCA
#> 25 GCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGA
#> 26 GCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTG
#> 27 GGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTGGATGGCATTGGAATCAATTTTACACAGAATCTATACCCACCAGAG
#> 28 TGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACAC
#> 29 TGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCATGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACAC
#> 30 ATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGC
#> 31 ATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTAGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGC
#> 32 ACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTT
#> 33 ACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAATTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTT
#> 34 GTAGCCCCGACTCTTGTACGGTCGGCATCTGAGACCAGTGAGAAACGCCCCTTCATGTGTGCTTACCCAGGCTGCAATAAGAGATATTTTAAG
#> 35 GTAGCCCCGACTCTTGTACGGTCGGCATCTGAGACCAGTGAGAAAAGCCCCTTCATGTGTGCTTACCCAGGCTGCAATAAGAGATATTTTAAG
#> 36 ATGACTGAATATAAACTTGTGGTAGTTGGAGCTGGTGGCGTAGGCAAGAGTGCCTTGACGATACAGCTAATTCAGAATCATTTTGTGGACGAA
#> 37 ATGACTGAATATAAACTTGTGGTAGTTGGAGCTGATGGCGTAGGCAAGAGTGCCTTGACGATACAGCTAATTCAGAATCATTTTGTGGACGAA
#> 38 ATGACTGAATATAAACTTGTGGTAGTTGGAGCTGTTGGCGTAGGCAAGAGTGCCTTGACGATACAGCTAATTCAGAATCATTTTGTGGACGAA
#> n_tiles nt peptide barcode_1 barcode_2
#> 1 1 93 IDGETCLLDILDTAGQEEYSAMRDQYMRTGE GCAGAAAAAAAA ACTGAAAAAAAA
#> 2 1 93 IDGETCLLDILDTAGLEEYSAMRDQYMRTGE TCAGAAAAAAAA CCTGAAAAAAAA
#> 3 1 93 IDGETCLLDILDTAGREEYSAMRDQYMRTGE AGAGAAAAAAAA GCTGAAAAAAAA
#> 4 1 93 EQEALEYFMKQMNDAHHGGWTTKMDWIFHTI CGAGAAAAAAAA TCTGAAAAAAAA
#> 5 1 93 EQEALEYFMKQMNDARHGGWTTKMDWIFHTI GGAGAAAAAAAA AGTGAAAAAAAA
#> 6 1 93 AQGKIVKICDFGLARDIMHDSNYVSKGSTFL TGAGAAAAAAAA CGTGAAAAAAAA
#> 7 1 93 AQGKIVKICDFGLARVIMHDSNYVSKGSTFL ATAGAAAAAAAA GGTGAAAAAAAA
#> 8 1 93 THGRITKICDFGLARDIKNDSNYVVKGNARL CTAGAAAAAAAA TGTGAAAAAAAA
#> 9 1 93 THGRITKICDFGLARVIKNDSNYVVKGNARL GTAGAAAAAAAA ATTGAAAAAAAA
#> 10 1 93 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD TTAGAAAAAAAA CTTGAAAAAAAA
#> 11 1 93 TGQCLHVLMGHVAAVSCVQYDGRRVVSGAYD AACGAAAAAAAA GTTGAAAAAAAA
#> 12 1 93 PHVCRLLGICLTSTVQLITQLMPFGCLLDYV CACGAAAAAAAA TTTGAAAAAAAA
#> 13 7 93 PHVCRLLGICLTSTVHTHHAAHALRLPPGLC GACGAAAAAAAA AAATAAAAAAAA
#> 14 7 93 THHAAHALRLPPGLCPGTQRQYWLPVPAQLV TACGAAAAAAAA CAATAAAAAAAA
#> 15 7 93 PGTQRQYWLPVPAQLVCADRKGHELLGGPSL ACCGAAAAAAAA GAATAAAAAAAA
#> 16 7 93 VCADRKGHELLGGPSLGAPRPGSQERTGENT CCCGAAAAAAAA TAATAAAAAAAA
#> 17 7 93 GAPRPGSQERTGENTAACQDHRFWAGQTAGC GCCGAAAAAAAA ACATAAAAAAAA
#> 18 7 93 ACQDHRFWAGQTAGCGRERIPCRRRQSAYQV TCCGAAAAAAAA CCATAAAAAAAA
#> 19 7 93 GRERIPCRRRQSAYQVDGIGINFTQNLYPPE AGCGAAAAAAAA GCATAAAAAAAA
#> 20 1 93 VCRLLGICLTSTVQLITQLMPFGCLLDYVRE CGCGAAAAAAAA TCATAAAAAAAA
#> 21 7 93 VCRLLGICLTSTVQLNAAHALRLPPGLCPGT GGCGAAAAAAAA AGATAAAAAAAA
#> 22 7 93 NAAHALRLPPGLCPGTQRQYWLPVPAQLVCA TGCGAAAAAAAA CGATAAAAAAAA
#> 23 7 93 TQRQYWLPVPAQLVCADRKGHELLGGPSLGA ATCGAAAAAAAA GGATAAAAAAAA
#> 24 7 93 ADRKGHELLGGPSLGAPRPGSQERTGENTAA CTCGAAAAAAAA TGATAAAAAAAA
#> 25 7 93 APRPGSQERTGENTAACQDHRFWAGQTAGCG GTCGAAAAAAAA ATATAAAAAAAA
#> 26 7 93 ACQDHRFWAGQTAGCGRERIPCRRRQSAYQV TTCGAAAAAAAA CTATAAAAAAAA
#> 27 7 93 GRERIPCRRRQSAYQVDGIGINFTQNLYPPE AAGGAAAAAAAA GTATAAAAAAAA
#> 28 1 93 CRLLGICLTSTVQLITQLMPFGCLLDYVREH CAGGAAAAAAAA TTATAAAAAAAA
#> 29 1 93 CRLLGICLTSTVQLIMQLMPFGCLLDYVREH GAGGAAAAAAAA AACTAAAAAAAA
#> 30 1 93 ICLTSTVQLITQLMPFGCLLDYVREHKDNIG TAGGAAAAAAAA CACTAAAAAAAA
#> 31 1 93 ICLTSTVQLITQLMPLGCLLDYVREHKDNIG ACGGAAAAAAAA GACTAAAAAAAA
#> 32 1 93 TPHLDRLVSARSVSPTTEMVSNESVDYRATF CCGGAAAAAAAA TACTAAAAAAAA
#> 33 1 93 TPHLDRLVSARSVSPITEMVSNESVDYRATF GCGGAAAAAAAA ACCTAAAAAAAA
#> 34 1 93 VAPTLVRSASETSEKRPFMCAYPGCNKRYFK TCGGAAAAAAAA CCCTAAAAAAAA
#> 35 1 93 VAPTLVRSASETSEKSPFMCAYPGCNKRYFK AGGGAAAAAAAA GCCTAAAAAAAA
#> 36 1 93 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDE CGGGAAAAAAAA TCCTAAAAAAAA
#> 37 1 93 MTEYKLVVVGADGVGKSALTIQLIQNHFVDE GGGGAAAAAAAA AGCTAAAAAAAA
#> 38 1 93 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDE TGGGAAAAAAAA CGCTAAAAAAAA
#> [ reached 'max' / getOption("max.print") -- omitted 8 rows ]
#>
#> $pat3
#> var_id mut_id pep_id pep_type gene_name
#> 1 chr2:208248388_G/A IDH1_R132 IDH1_R132 ref IDH1
#> 2 chr2:208248388_G/A IDH1_R132 IDH1_R132L alt IDH1
#> 3 chr3:179234297_A/G PIK3CA_H1047 PIK3CA_H1047 ref PIK3CA
#> 4 chr3:179234297_A/G PIK3CA_H1047 PIK3CA_H1047R alt PIK3CA
#> 5 chr4:54285926_A/T PDGFRA_D842 PDGFRA_D842 ref PDGFRA
#> 6 chr4:54285926_A/T PDGFRA_D842 PDGFRA_D842V alt PDGFRA
#> 7 chr4:54733155_A/T KIT_D816 KIT_D816 ref KIT
#> 8 chr4:54733155_A/T KIT_D816 KIT_D816V alt KIT
#> 9 chr4:152326137_C/T FBXW7_R505 FBXW7_R505 ref FBXW7
#> 10 chr4:152326137_C/T FBXW7_R505 FBXW7_R505S alt FBXW7
#> 11 chr7:55181370_C/CA EGFR_787 EGFR_787 ref EGFR
#> 12 chr7:55181370_C/CA EGFR_787 EGFR_787fs-1 alt EGFR
#> 13 chr7:55181370_C/CA EGFR_787 EGFR_787fs-2 alt EGFR
#> 14 chr7:55181370_C/CA EGFR_787 EGFR_787fs-3 alt EGFR
#> 15 chr7:55181370_C/CA EGFR_787 EGFR_787fs-4 alt EGFR
#> 16 chr7:55181370_C/CA EGFR_787 EGFR_787fs-5 alt EGFR
#> 17 chr7:55181370_C/CA EGFR_787 EGFR_787fs-6 alt EGFR
#> 18 chr7:55181370_C/CA EGFR_787 EGFR_787fs-7 alt EGFR
#> 19 chr7:55181374_ATC/A EGFR_789 EGFR_789 ref EGFR
#> 20 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-1 alt EGFR
#> 21 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-2 alt EGFR
#> 22 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-3 alt EGFR
#> 23 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-4 alt EGFR
#> 24 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-5 alt EGFR
#> 25 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-6 alt EGFR
#> 26 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-7 alt EGFR
#> 27 chr7:55181378_C/T EGFR_T790 EGFR_T790 ref EGFR
#> 28 chr7:55181378_C/T EGFR_T790 EGFR_T790M alt EGFR
#> 29 chr7:55191822_T/G EGFR_L858 EGFR_L858 ref EGFR
#> 30 chr7:55191822_T/G EGFR_L858 EGFR_L858R alt EGFR
#> 31 chr9:5073770_G/T JAK2_V617 JAK2_V617 ref JAK2
#> 32 chr9:5073770_G/T JAK2_V617 JAK2_V617F alt JAK2
#> 33 chr12:25245347_G/A KRAS_G13 KRAS_G13 ref KRAS
#> 34 chr12:25245347_G/A KRAS_G13 KRAS_G13V alt KRAS
#> 35 chr15:90088702_C/T IDH2_R140 IDH2_R140 ref IDH2
#> 36 chr15:90088702_C/T IDH2_R140 IDH2_R140Q alt IDH2
#> 37 BCR--ABL1.fs BCR--ABL1.fs BCR ref BCR
#> 38 BCR--ABL1.fs BCR--ABL1.fs ABL1 ref ABL1.fs
#> gene_id tx_id
#> 1 ENSG00000138413 ENST00000345146
#> 2 ENSG00000138413 ENST00000345146
#> 3 ENSG00000121879 ENST00000263967
#> 4 ENSG00000121879 ENST00000263967
#> 5 ENSG00000134853 ENST00000257290
#> 6 ENSG00000134853 ENST00000257290
#> 7 ENSG00000157404 ENST00000288135
#> 8 ENSG00000157404 ENST00000288135
#> 9 ENSG00000109670 ENST00000281708
#> 10 ENSG00000109670 ENST00000281708
#> 11 ENSG00000146648 ENST00000275493
#> 12 ENSG00000146648 ENST00000275493
#> 13 ENSG00000146648 ENST00000275493
#> 14 ENSG00000146648 ENST00000275493
#> 15 ENSG00000146648 ENST00000275493
#> 16 ENSG00000146648 ENST00000275493
#> 17 ENSG00000146648 ENST00000275493
#> 18 ENSG00000146648 ENST00000275493
#> 19 ENSG00000146648 ENST00000275493
#> 20 ENSG00000146648 ENST00000275493
#> 21 ENSG00000146648 ENST00000275493
#> 22 ENSG00000146648 ENST00000275493
#> 23 ENSG00000146648 ENST00000275493
#> 24 ENSG00000146648 ENST00000275493
#> 25 ENSG00000146648 ENST00000275493
#> 26 ENSG00000146648 ENST00000275493
#> 27 ENSG00000146648 ENST00000275493
#> 28 ENSG00000146648 ENST00000275493
#> 29 ENSG00000146648 ENST00000275493
#> 30 ENSG00000146648 ENST00000275493
#> 31 ENSG00000096968 ENST00000381652
#> 32 ENSG00000096968 ENST00000381652
#> 33 ENSG00000133703 ENST00000256078
#> 34 ENSG00000133703 ENST00000256078
#> 35 ENSG00000182054 ENST00000330062
#> 36 ENSG00000182054 ENST00000330062
#> 37 ENSG00000186716 ENST00000305877
#> 38 ENSG00000097007 ENST00000318560
#> tiled
#> 1 ATCCCCCGGCTTGTGAGTGGATGGGTAAAACCTATCATCATAGGTCGTCATGCTTATGGGGATCAATACAGAGCAACTGATTTTGTTGTTCCT
#> 2 ATCCCCCGGCTTGTGAGTGGATGGGTAAAACCTATCATCATAGGTCTTCATGCTTATGGGGATCAATACAGAGCAACTGATTTTGTTGTTCCT
#> 3 GAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATGGTGGCTGGACAACAAAAATGGATTGGATCTTCCACACAATT
#> 4 GAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACGTCATGGTGGCTGGACAACAAAAATGGATTGGATCTTCCACACAATT
#> 5 GCACAAGGAAAAATTGTGAAGATCTGTGACTTTGGCCTGGCCAGAGACATCATGCATGATTCGAACTATGTGTCGAAAGGCAGTACCTTTCTG
#> 6 GCACAAGGAAAAATTGTGAAGATCTGTGACTTTGGCCTGGCCAGAGTCATCATGCATGATTCGAACTATGTGTCGAAAGGCAGTACCTTTCTG
#> 7 ACTCATGGTCGGATCACAAAGATTTGTGATTTTGGTCTAGCCAGAGACATCAAGAATGATTCTAATTATGTGGTTAAAGGAAACGCTCGACTA
#> 8 ACTCATGGTCGGATCACAAAGATTTGTGATTTTGGTCTAGCCAGAGTCATCAAGAATGATTCTAATTATGTGGTTAAAGGAAACGCTCGACTA
#> 9 ACAGGCCAGTGTTTACATGTTTTGATGGGTCATGTTGCAGCAGTCCGCTGTGTTCAATATGATGGCAGGAGGGTTGTTAGTGGAGCATATGAT
#> 10 ACAGGCCAGTGTTTACATGTTTTGATGGGTCATGTTGCAGCAGTCAGCTGTGTTCAATATGATGGCAGGAGGGTTGTTAGTGGAGCATATGAT
#> 11 CCCCACGTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTC
#> 12 CCCCACGTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCACACTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGT
#> 13 ACTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTG
#> 14 CCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTT
#> 15 GTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACC
#> 16 GGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGC
#> 17 GCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTG
#> 18 GGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTGGATGGCATTGGAATCAATTTTACACAGAATCTATACCCACCAGAG
#> 19 GTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAA
#> 20 GTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCAACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACA
#> 21 AACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCA
#> 22 ACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCA
#> 23 GCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCA
#> 24 GCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGA
#> 25 GCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTG
#> 26 GGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTGGATGGCATTGGAATCAATTTTACACAGAATCTATACCCACCAGAG
#> 27 TGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACAC
#> 28 TGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCATGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACAC
#> 29 GTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGA
#> 30 GTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCGGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGA
#> 31 AGCAAGCTTTCTCACAAGCATTTGGTTTTAAATTATGGAGTATGTGTCTGTGGAGACGAGAATATTCTGGTTCAGGAGTTTGTAAAATTTGGA
#> 32 AGCAAGCTTTCTCACAAGCATTTGGTTTTAAATTATGGAGTATGTTTCTGTGGAGACGAGAATATTCTGGTTCAGGAGTTTGTAAAATTTGGA
#> 33 ATGACTGAATATAAACTTGTGGTAGTTGGAGCTGGTGGCGTAGGCAAGAGTGCCTTGACGATACAGCTAATTCAGAATCATTTTGTGGACGAA
#> 34 ATGACTGAATATAAACTTGTGGTAGTTGGAGCTGGTGTCGTAGGCAAGAGTGCCTTGACGATACAGCTAATTCAGAATCATTTTGTGGACGAA
#> 35 GAGTTCAAGCTGAAGAAGATGTGGAAAAGTCCCAATGGAACTATCCGGAACATCCTGGGGGGGACTGTCTTCCGGGAGCCCATCATCTGCAAA
#> 36 GAGTTCAAGCTGAAGAAGATGTGGAAAAGTCCCAATGGAACTATCCAGAACATCCTGGGGGGGACTGTCTTCCGGGAGCCCATCATCTGCAAA
#> 37 AAACTCCAGACTGTCCACAGCATTCCGCTGACCATCAATAAGGAAGATGATGAGTCTCCGGGGCTCTATGGGTTTCTGAATGTCATCGTCCAC
#> 38 ATGTTGGAGATCTGCCTGAAGCTGGTGGGCTGCAAATCCAAGAAGGGGCTGTCCTCGTCCTCCAGCTGTTATCTGGAAGAAGCCCTTCAGCGG
#> n_tiles nt peptide barcode_1 barcode_2
#> 1 1 93 IPRLVSGWVKPIIIGRHAYGDQYRATDFVVP GAGTAAAAAAAA CACACAAAAAAA
#> 2 1 93 IPRLVSGWVKPIIIGLHAYGDQYRATDFVVP TAGTAAAAAAAA GACACAAAAAAA
#> 3 1 93 EQEALEYFMKQMNDAHHGGWTTKMDWIFHTI ACGTAAAAAAAA TACACAAAAAAA
#> 4 1 93 EQEALEYFMKQMNDARHGGWTTKMDWIFHTI CCGTAAAAAAAA ACCACAAAAAAA
#> 5 1 93 AQGKIVKICDFGLARDIMHDSNYVSKGSTFL GCGTAAAAAAAA CCCACAAAAAAA
#> 6 1 93 AQGKIVKICDFGLARVIMHDSNYVSKGSTFL TCGTAAAAAAAA GCCACAAAAAAA
#> 7 1 93 THGRITKICDFGLARDIKNDSNYVVKGNARL AGGTAAAAAAAA TCCACAAAAAAA
#> 8 1 93 THGRITKICDFGLARVIKNDSNYVVKGNARL CGGTAAAAAAAA AGCACAAAAAAA
#> 9 1 93 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD GGGTAAAAAAAA CGCACAAAAAAA
#> 10 1 93 TGQCLHVLMGHVAAVSCVQYDGRRVVSGAYD TGGTAAAAAAAA GGCACAAAAAAA
#> 11 1 93 PHVCRLLGICLTSTVQLITQLMPFGCLLDYV ATGTAAAAAAAA TGCACAAAAAAA
#> 12 7 93 PHVCRLLGICLTSTVHTHHAAHALRLPPGLC CTGTAAAAAAAA ATCACAAAAAAA
#> 13 7 93 THHAAHALRLPPGLCPGTQRQYWLPVPAQLV GTGTAAAAAAAA CTCACAAAAAAA
#> 14 7 93 PGTQRQYWLPVPAQLVCADRKGHELLGGPSL TTGTAAAAAAAA GTCACAAAAAAA
#> 15 7 93 VCADRKGHELLGGPSLGAPRPGSQERTGENT AATTAAAAAAAA TTCACAAAAAAA
#> 16 7 93 GAPRPGSQERTGENTAACQDHRFWAGQTAGC CATTAAAAAAAA AAGACAAAAAAA
#> 17 7 93 ACQDHRFWAGQTAGCGRERIPCRRRQSAYQV GATTAAAAAAAA CAGACAAAAAAA
#> 18 7 93 GRERIPCRRRQSAYQVDGIGINFTQNLYPPE TATTAAAAAAAA GAGACAAAAAAA
#> 19 1 93 VCRLLGICLTSTVQLITQLMPFGCLLDYVRE ACTTAAAAAAAA TAGACAAAAAAA
#> 20 7 93 VCRLLGICLTSTVQLNAAHALRLPPGLCPGT CCTTAAAAAAAA ACGACAAAAAAA
#> 21 7 93 NAAHALRLPPGLCPGTQRQYWLPVPAQLVCA GCTTAAAAAAAA CCGACAAAAAAA
#> 22 7 93 TQRQYWLPVPAQLVCADRKGHELLGGPSLGA TCTTAAAAAAAA GCGACAAAAAAA
#> 23 7 93 ADRKGHELLGGPSLGAPRPGSQERTGENTAA AGTTAAAAAAAA TCGACAAAAAAA
#> 24 7 93 APRPGSQERTGENTAACQDHRFWAGQTAGCG CGTTAAAAAAAA AGGACAAAAAAA
#> 25 7 93 ACQDHRFWAGQTAGCGRERIPCRRRQSAYQV GGTTAAAAAAAA CGGACAAAAAAA
#> 26 7 93 GRERIPCRRRQSAYQVDGIGINFTQNLYPPE TGTTAAAAAAAA GGGACAAAAAAA
#> 27 1 93 CRLLGICLTSTVQLITQLMPFGCLLDYVREH ATTTAAAAAAAA TGGACAAAAAAA
#> 28 1 93 CRLLGICLTSTVQLIMQLMPFGCLLDYVREH CTTTAAAAAAAA ATGACAAAAAAA
#> 29 1 93 VLVKTPQHVKITDFGLAKLLGAEEKEYHAEG GTTTAAAAAAAA CTGACAAAAAAA
#> 30 1 93 VLVKTPQHVKITDFGRAKLLGAEEKEYHAEG TTTTAAAAAAAA GTGACAAAAAAA
#> 31 1 93 SKLSHKHLVLNYGVCVCGDENILVQEFVKFG AAAACAAAAAAA TTGACAAAAAAA
#> 32 1 93 SKLSHKHLVLNYGVCFCGDENILVQEFVKFG CAAACAAAAAAA AATACAAAAAAA
#> 33 1 93 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDE GAAACAAAAAAA CATACAAAAAAA
#> 34 1 93 MTEYKLVVVGAGVVGKSALTIQLIQNHFVDE TAAACAAAAAAA GATACAAAAAAA
#> 35 1 93 EFKLKKMWKSPNGTIRNILGGTVFREPIICK ACAACAAAAAAA TATACAAAAAAA
#> 36 1 93 EFKLKKMWKSPNGTIQNILGGTVFREPIICK CCAACAAAAAAA ACTACAAAAAAA
#> 37 1 93 KLQTVHSIPLTINKEDDESPGLYGFLNVIVH GCAACAAAAAAA CCTACAAAAAAA
#> 38 1 93 MLEICLKLVGCKSKKGLSSSSSCYLEEALQR TCAACAAAAAAA GCTACAAAAAAA
#> [ reached 'max' / getOption("max.print") -- omitted 9 rows ]
#>
#> $common
#> var_id mut_id pep_id pep_type gene_name
#> 1 chr1:114713908_T/A NRAS_Q61 NRAS_Q61 ref NRAS
#> 2 chr1:114713908_T/A NRAS_Q61 NRAS_Q61L alt NRAS
#> 3 chr1:114713908_T/C NRAS_Q61 NRAS_Q61R alt NRAS
#> 4 chr2:208248388_G/A IDH1_R132 IDH1_R132 ref IDH1
#> 5 chr2:208248388_G/A IDH1_R132 IDH1_R132L alt IDH1
#> 6 chr3:179234297_A/G PIK3CA_H1047 PIK3CA_H1047 ref PIK3CA
#> 7 chr3:179234297_A/G PIK3CA_H1047 PIK3CA_H1047R alt PIK3CA
#> 8 chr4:54285926_A/T PDGFRA_D842 PDGFRA_D842 ref PDGFRA
#> 9 chr4:54285926_A/T PDGFRA_D842 PDGFRA_D842V alt PDGFRA
#> 10 chr4:54733155_A/T KIT_D816 KIT_D816 ref KIT
#> 11 chr4:54733155_A/T KIT_D816 KIT_D816V alt KIT
#> 12 chr4:152326137_C/T FBXW7_R505 FBXW7_R505 ref FBXW7
#> 13 chr4:152326137_C/T FBXW7_R505 FBXW7_R505S alt FBXW7
#> 14 chr7:55181370_C/CA EGFR_787 EGFR_787 ref EGFR
#> 15 chr7:55181370_C/CA EGFR_787 EGFR_787fs-1 alt EGFR
#> 16 chr7:55181370_C/CA EGFR_787 EGFR_787fs-2 alt EGFR
#> 17 chr7:55181370_C/CA EGFR_787 EGFR_787fs-3 alt EGFR
#> 18 chr7:55181370_C/CA EGFR_787 EGFR_787fs-4 alt EGFR
#> 19 chr7:55181370_C/CA EGFR_787 EGFR_787fs-5 alt EGFR
#> 20 chr7:55181370_C/CA EGFR_787 EGFR_787fs-6 alt EGFR
#> 21 chr7:55181370_C/CA EGFR_787 EGFR_787fs-7 alt EGFR
#> 22 chr7:55181374_ATC/A EGFR_789 EGFR_789 ref EGFR
#> 23 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-1 alt EGFR
#> 24 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-2 alt EGFR
#> 25 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-3 alt EGFR
#> 26 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-4 alt EGFR
#> 27 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-5 alt EGFR
#> 28 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-6 alt EGFR
#> 29 chr7:55181374_ATC/A EGFR_789 EGFR_789fs-7 alt EGFR
#> 30 chr7:55181394_G/A EGFR_F795 EGFR_F795 ref EGFR
#> 31 chr7:55181394_G/A EGFR_F795 EGFR_F795L alt EGFR
#> 32 chr7:116771936_C/T MET_T1010 MET_T1010 ref MET
#> 33 chr7:116771936_C/T MET_T1010 MET_T1010I alt MET
#> 34 chr11:32396341_C/T WT1_R377 WT1_R377 ref WT1
#> 35 chr11:32396341_C/T WT1_R377 WT1_R377S alt WT1
#> 36 chr12:25245350_C/T KRAS_G12 KRAS_G12 ref KRAS
#> 37 chr12:25245350_C/T KRAS_G12 KRAS_G12D alt KRAS
#> 38 chr12:25245350_C/A KRAS_G12 KRAS_G12V alt KRAS
#> gene_id tx_id
#> 1 ENSG00000213281 ENST00000369535
#> 2 ENSG00000213281 ENST00000369535
#> 3 ENSG00000213281 ENST00000369535
#> 4 ENSG00000138413 ENST00000345146
#> 5 ENSG00000138413 ENST00000345146
#> 6 ENSG00000121879 ENST00000263967
#> 7 ENSG00000121879 ENST00000263967
#> 8 ENSG00000134853 ENST00000257290
#> 9 ENSG00000134853 ENST00000257290
#> 10 ENSG00000157404 ENST00000288135
#> 11 ENSG00000157404 ENST00000288135
#> 12 ENSG00000109670 ENST00000281708
#> 13 ENSG00000109670 ENST00000281708
#> 14 ENSG00000146648 ENST00000275493
#> 15 ENSG00000146648 ENST00000275493
#> 16 ENSG00000146648 ENST00000275493
#> 17 ENSG00000146648 ENST00000275493
#> 18 ENSG00000146648 ENST00000275493
#> 19 ENSG00000146648 ENST00000275493
#> 20 ENSG00000146648 ENST00000275493
#> 21 ENSG00000146648 ENST00000275493
#> 22 ENSG00000146648 ENST00000275493
#> 23 ENSG00000146648 ENST00000275493
#> 24 ENSG00000146648 ENST00000275493
#> 25 ENSG00000146648 ENST00000275493
#> 26 ENSG00000146648 ENST00000275493
#> 27 ENSG00000146648 ENST00000275493
#> 28 ENSG00000146648 ENST00000275493
#> 29 ENSG00000146648 ENST00000275493
#> 30 ENSG00000146648 ENST00000275493
#> 31 ENSG00000146648 ENST00000275493
#> 32 ENSG00000105976 ENST00000318493
#> 33 ENSG00000105976 ENST00000318493
#> 34 ENSG00000184937 ENST00000332351
#> 35 ENSG00000184937 ENST00000332351
#> 36 ENSG00000133703 ENST00000256078
#> 37 ENSG00000133703 ENST00000256078
#> 38 ENSG00000133703 ENST00000256078
#> tiled
#> 1 ATAGATGGTGAAACCTGTTTGTTGGACATACTGGATACAGCTGGACAAGAAGAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCGAA
#> 2 ATAGATGGTGAAACCTGTTTGTTGGACATACTGGATACAGCTGGACTAGAAGAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCGAA
#> 3 ATAGATGGTGAAACCTGTTTGTTGGACATACTGGATACAGCTGGACGAGAAGAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCGAA
#> 4 ATCCCCCGGCTTGTGAGTGGATGGGTAAAACCTATCATCATAGGTCGTCATGCTTATGGGGATCAATACAGAGCAACTGATTTTGTTGTTCCT
#> 5 ATCCCCCGGCTTGTGAGTGGATGGGTAAAACCTATCATCATAGGTCTTCATGCTTATGGGGATCAATACAGAGCAACTGATTTTGTTGTTCCT
#> 6 GAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATGGTGGCTGGACAACAAAAATGGATTGGATCTTCCACACAATT
#> 7 GAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACGTCATGGTGGCTGGACAACAAAAATGGATTGGATCTTCCACACAATT
#> 8 GCACAAGGAAAAATTGTGAAGATCTGTGACTTTGGCCTGGCCAGAGACATCATGCATGATTCGAACTATGTGTCGAAAGGCAGTACCTTTCTG
#> 9 GCACAAGGAAAAATTGTGAAGATCTGTGACTTTGGCCTGGCCAGAGTCATCATGCATGATTCGAACTATGTGTCGAAAGGCAGTACCTTTCTG
#> 10 ACTCATGGTCGGATCACAAAGATTTGTGATTTTGGTCTAGCCAGAGACATCAAGAATGATTCTAATTATGTGGTTAAAGGAAACGCTCGACTA
#> 11 ACTCATGGTCGGATCACAAAGATTTGTGATTTTGGTCTAGCCAGAGTCATCAAGAATGATTCTAATTATGTGGTTAAAGGAAACGCTCGACTA
#> 12 ACAGGCCAGTGTTTACATGTTTTGATGGGTCATGTTGCAGCAGTCCGCTGTGTTCAATATGATGGCAGGAGGGTTGTTAGTGGAGCATATGAT
#> 13 ACAGGCCAGTGTTTACATGTTTTGATGGGTCATGTTGCAGCAGTCAGCTGTGTTCAATATGATGGCAGGAGGGTTGTTAGTGGAGCATATGAT
#> 14 CCCCACGTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTC
#> 15 CCCCACGTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCACACTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGT
#> 16 ACTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTG
#> 17 CCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTT
#> 18 GTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACC
#> 19 GGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGC
#> 20 GCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTG
#> 21 GGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTGGATGGCATTGGAATCAATTTTACACAGAATCTATACCCACCAGAG
#> 22 GTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAA
#> 23 GTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCAACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACA
#> 24 AACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCA
#> 25 ACACAAAGACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCA
#> 26 GCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCA
#> 27 GCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGA
#> 28 GCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTG
#> 29 GGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTGGATGGCATTGGAATCAATTTTACACAGAATCTATACCCACCAGAG
#> 30 ATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGC
#> 31 ATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTAGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGC
#> 32 ACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTT
#> 33 ACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAATTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTT
#> 34 GTAGCCCCGACTCTTGTACGGTCGGCATCTGAGACCAGTGAGAAACGCCCCTTCATGTGTGCTTACCCAGGCTGCAATAAGAGATATTTTAAG
#> 35 GTAGCCCCGACTCTTGTACGGTCGGCATCTGAGACCAGTGAGAAAAGCCCCTTCATGTGTGCTTACCCAGGCTGCAATAAGAGATATTTTAAG
#> 36 ATGACTGAATATAAACTTGTGGTAGTTGGAGCTGGTGGCGTAGGCAAGAGTGCCTTGACGATACAGCTAATTCAGAATCATTTTGTGGACGAA
#> 37 ATGACTGAATATAAACTTGTGGTAGTTGGAGCTGATGGCGTAGGCAAGAGTGCCTTGACGATACAGCTAATTCAGAATCATTTTGTGGACGAA
#> 38 ATGACTGAATATAAACTTGTGGTAGTTGGAGCTGTTGGCGTAGGCAAGAGTGCCTTGACGATACAGCTAATTCAGAATCATTTTGTGGACGAA
#> n_tiles nt peptide barcode_1 barcode_2
#> 1 1 93 IDGETCLLDILDTAGQEEYSAMRDQYMRTGE AAACCAAAAAAA GTGCCAAAAAAA
#> 2 1 93 IDGETCLLDILDTAGLEEYSAMRDQYMRTGE CAACCAAAAAAA TTGCCAAAAAAA
#> 3 1 93 IDGETCLLDILDTAGREEYSAMRDQYMRTGE GAACCAAAAAAA AATCCAAAAAAA
#> 4 1 93 IPRLVSGWVKPIIIGRHAYGDQYRATDFVVP TAACCAAAAAAA CATCCAAAAAAA
#> 5 1 93 IPRLVSGWVKPIIIGLHAYGDQYRATDFVVP ACACCAAAAAAA GATCCAAAAAAA
#> 6 1 93 EQEALEYFMKQMNDAHHGGWTTKMDWIFHTI CCACCAAAAAAA TATCCAAAAAAA
#> 7 1 93 EQEALEYFMKQMNDARHGGWTTKMDWIFHTI GCACCAAAAAAA ACTCCAAAAAAA
#> 8 1 93 AQGKIVKICDFGLARDIMHDSNYVSKGSTFL TCACCAAAAAAA CCTCCAAAAAAA
#> 9 1 93 AQGKIVKICDFGLARVIMHDSNYVSKGSTFL AGACCAAAAAAA GCTCCAAAAAAA
#> 10 1 93 THGRITKICDFGLARDIKNDSNYVVKGNARL CGACCAAAAAAA TCTCCAAAAAAA
#> 11 1 93 THGRITKICDFGLARVIKNDSNYVVKGNARL GGACCAAAAAAA AGTCCAAAAAAA
#> 12 1 93 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD TGACCAAAAAAA CGTCCAAAAAAA
#> 13 1 93 TGQCLHVLMGHVAAVSCVQYDGRRVVSGAYD ATACCAAAAAAA GGTCCAAAAAAA
#> 14 1 93 PHVCRLLGICLTSTVQLITQLMPFGCLLDYV CTACCAAAAAAA TGTCCAAAAAAA
#> 15 7 93 PHVCRLLGICLTSTVHTHHAAHALRLPPGLC GTACCAAAAAAA ATTCCAAAAAAA
#> 16 7 93 THHAAHALRLPPGLCPGTQRQYWLPVPAQLV TTACCAAAAAAA CTTCCAAAAAAA
#> 17 7 93 PGTQRQYWLPVPAQLVCADRKGHELLGGPSL AACCCAAAAAAA GTTCCAAAAAAA
#> 18 7 93 VCADRKGHELLGGPSLGAPRPGSQERTGENT CACCCAAAAAAA TTTCCAAAAAAA
#> 19 7 93 GAPRPGSQERTGENTAACQDHRFWAGQTAGC GACCCAAAAAAA AAAGCAAAAAAA
#> 20 7 93 ACQDHRFWAGQTAGCGRERIPCRRRQSAYQV TACCCAAAAAAA CAAGCAAAAAAA
#> 21 7 93 GRERIPCRRRQSAYQVDGIGINFTQNLYPPE ACCCCAAAAAAA GAAGCAAAAAAA
#> 22 1 93 VCRLLGICLTSTVQLITQLMPFGCLLDYVRE CCCCCAAAAAAA TAAGCAAAAAAA
#> 23 7 93 VCRLLGICLTSTVQLNAAHALRLPPGLCPGT GCCCCAAAAAAA ACAGCAAAAAAA
#> 24 7 93 NAAHALRLPPGLCPGTQRQYWLPVPAQLVCA TCCCCAAAAAAA CCAGCAAAAAAA
#> 25 7 93 TQRQYWLPVPAQLVCADRKGHELLGGPSLGA AGCCCAAAAAAA GCAGCAAAAAAA
#> 26 7 93 ADRKGHELLGGPSLGAPRPGSQERTGENTAA CGCCCAAAAAAA TCAGCAAAAAAA
#> 27 7 93 APRPGSQERTGENTAACQDHRFWAGQTAGCG GGCCCAAAAAAA AGAGCAAAAAAA
#> 28 7 93 ACQDHRFWAGQTAGCGRERIPCRRRQSAYQV TGCCCAAAAAAA CGAGCAAAAAAA
#> 29 7 93 GRERIPCRRRQSAYQVDGIGINFTQNLYPPE ATCCCAAAAAAA GGAGCAAAAAAA
#> 30 1 93 ICLTSTVQLITQLMPFGCLLDYVREHKDNIG CTCCCAAAAAAA TGAGCAAAAAAA
#> 31 1 93 ICLTSTVQLITQLMPLGCLLDYVREHKDNIG GTCCCAAAAAAA ATAGCAAAAAAA
#> 32 1 93 TPHLDRLVSARSVSPTTEMVSNESVDYRATF TTCCCAAAAAAA CTAGCAAAAAAA
#> 33 1 93 TPHLDRLVSARSVSPITEMVSNESVDYRATF AAGCCAAAAAAA GTAGCAAAAAAA
#> 34 1 93 VAPTLVRSASETSEKRPFMCAYPGCNKRYFK CAGCCAAAAAAA TTAGCAAAAAAA
#> 35 1 93 VAPTLVRSASETSEKSPFMCAYPGCNKRYFK GAGCCAAAAAAA AACGCAAAAAAA
#> 36 1 93 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDE TAGCCAAAAAAA CACGCAAAAAAA
#> 37 1 93 MTEYKLVVVGADGVGKSALTIQLIQNHFVDE ACGCCAAAAAAA GACGCAAAAAAA
#> 38 1 93 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDE CCGCCAAAAAAA TACGCAAAAAAA
#> [ reached 'max' / getOption("max.print") -- omitted 8 rows ]
#>