Skip to contents

Remove a Restriction Enzyme cut site but keep AA in a tiled peptide data.frame

Source: R/remove_cutsite.r
remove_cutsite.Rd

Remove a Restriction Enzyme cut site but keep AA in a tiled peptide data.frame

Usage

remove_cutsite(pep, ...)

Arguments

pep

A data.frame of tiled peptides

...

Named argumennts of cut sites, e.g. `BbsI="GAAGAC"`

Value

A data.frame with replace nucleotides and number of replacements

Examples

pep = data.frame(pep_id="p1", tiled="ATGGCCGCC")
remove_cutsite(pep, BbsI="GAAGAC")
#>   pep_id     tiled BbsI_replaced
#> 1     p1 ATGGCCGCC             0