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Subset nucleotide/protein sequences to codon +/- 45 bp context

Source: R/subset_context.r
subset_context.Rd

Subset nucleotide/protein sequences to codon +/- 45 bp context

Usage

subset_context(codv, ctx_codons)

Arguments

codv

Annotated variants from `annotate_coding()`

ctx_codons

How many flanking codons each to include in the context

Value

GRanges object with sequence information of only context

Examples

if (interactive()) {
    subset_context(codv, ctx_codons=15)
}